rs6344540 SNP Detail

Summary

• ID
  rs6344540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTGTCA CGCTTTTCCG
  GACACCACCG TTTCCTTTTA GAAGTTTGGA CCATTTGATC GCCCTCTTGG TGAGTATCAC
  CAGGTACGTG GAAAAGAATT CTTCATAAGC CGCATAGTCA AAGTCTTCGG GCCTTTCAAA
  CCCATACGGA TCGATCCTAC AAACAAAAAG AACCTGTTTC CCCGAACCAA GTTTCCGCGC
  Y
  TGCGGGGATG CGGCTGGGGT CCAAGAGCTC CGACACCCGA CACCCCTCGG TCCGCCCCTC
  CGTCCATCCT CAGTTCACCT TCCCTTCCTC TCTTCCTCCC CTCCTCCATC CCCTCCACCC
  CCTCATGCCC CTCGCTCTCC GTGGACCAGA GCGCGTCCCC CGCGCAGCAT CGACTGGCTC
  AGACCCAGTC CGGAGAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss8750587	WI_WGS_8_13187983	WI	MOUSE	f	SNP		C	T
ss148683931	ENSMUSSNP4524590	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C		T
ss322505051	CHEV_8_13200245	CHEVERUD	SCREENING_POP	f	SNP					C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs6344540					SNP	C	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810030D12Rik	RIKEN cDNA 2810030D12 gene			537 bp upstream
Cpgi20110	CpG island 20110			within coordinates
Gm56825	predicted gene, 56825			397 bp downstream
Grtp1	GH regulated TBC protein 1			Intron
				Noncoding-Transcript-Variant
Rr659872	regulatory region 659872			677 bp distal
Rr659873	regulatory region 659873			280 bp proximal
Rr659874	regulatory region 659874			720 bp proximal
Rr659875	regulatory region 659875			1239 bp proximal
Rr659876	regulatory region 659876			1627 bp proximal
Rr659877	regulatory region 659877			1978 bp proximal
Tssr76386	transcription start site region 76386			531 bp upstream
Tssr76387	transcription start site region 76387			701 bp upstream
Tssr80428	transcription start site region 80428			331 bp downstream
Tssr80429	transcription start site region 80429			1168 bp downstream