rs6344860 SNP Detail

Summary

• ID
  rs6344860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149560038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACCCAA TGGACTGCTG
  GTCCCTCCGC GGGCGGCCTG AGTTGCCATG GTGACAGGGC AGCTGCTCGG GCGCCATTGG
  CTAAAACTGA CCGAGCTTGC CCGGCCTCCA TCCCGCCCTC CCCAGCCTGA GGGGCAGTTT
  TCGTTCCAGT TGACTCCAGT GAATAACCGG TCGGGAACTT CTGTCGCTTA AGTGGTGACT
  Y
  CGGTGGCAGT GTCCGGCTCC CGACGCCGAA AAACTATTGA AAGGACGGAG AAAGAACACA
  CTACTCCGGG ACCCCAGGCC TCTCCGGTCA CGAACTTGCT GTTGGCAGAG AGCATGTCGG
  GAAGCGTAGT CTGGCCGGGA GACCCTAGCG CCTTGCATGC TGGGAAACGC AGTCCAGTGG
  TGAGGCCTCG GTGCTTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8750908	WI_WGS_5_148879111	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6344860					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149560038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	within coordinates
Hsph1	heat shock 105kDa/110kDa protein 1	197 bp upstream
Rr399535	regulatory region 399535	61 bp downstream
Rr625552	regulatory region 625552	413 bp distal
Rr625553	regulatory region 625553	135 bp distal
Rr625554	regulatory region 625554	within coordinates
Tssr49917	transcription start site region 49917	118 bp downstream
Tssr49918	transcription start site region 49918	49 bp downstream
Tssr49919	transcription start site region 49919	34 bp downstream
Tssr49920	transcription start site region 49920	244 bp upstream
Tssr54646	transcription start site region 54646	383 bp upstream
Tssr54647	transcription start site region 54647	360 bp upstream
Tssr54648	transcription start site region 54648	320 bp upstream
Tssr54649	transcription start site region 54649	282 bp upstream
Tssr54650	transcription start site region 54650	234 bp upstream
Tssr54651	transcription start site region 54651	90 bp downstream