rs6345268 SNP Detail

Summary

• ID
  rs6345268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32739470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACCCTCTTGC
  CTTTCAAAAT ATTTTCTCCT TGGCTCACTG AAGCCTGAAA TCCCAATGAC ACTGACCCAT
  GCCTTTGATG TCTGCAGCCA AGGACTTTGT CCTCCTGAGA GCCAGAACAC ATTAAGCTTC
  TTTGGGCATT GCTGATCCTT CACTGAGAAT GATTTTCATT GTGTGCGCTC ATACAATGAG
  GCAAGAGAAG AGTTGGTTCC TACCATGTAT ATAGACAACA AGAAAGAACA TGGAAGATTG
  R
  GAGCCTTGCC AGGGAAGAGT GACATCCAGA GAGCAGGTGG AACAGTGTTG CCCTTTCTTT
  GGTCAAAGCG TTTTGAGGCC AGCTCNAGCA TTTTTAGTTT GTTGCTCTTC ACATTAAACT
  CCAGACTTCC AGCAGCCTGA AAACATGGAT TATAATGTGT CCTTGGGTTT GGTTATTCAA
  AATGCTTGCT NGTGCCTCTT TGTAGGATGT ACGTAATACA CTGTTCCCAG CACTGCTCAC
  AGGAGGCGTT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8751318	WI_WGS_13_32052393	WI	MOUSE	f	SNP							G		A
ss49080988	NES12424485	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6345268					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080988	NES12424485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32739470 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr6	DNA segment, Chr. 13, Case Western Reserve 6	1093 bp distal
Rr275656	regulatory region 275656	1270 bp distal
Rr278919	regulatory region 278919	531 bp distal
Rr278920	regulatory region 278920	within coordinates