rs6345360 SNP Detail

Summary

• ID
  rs6345360
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:103244206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCACTC ACACACACTC
  ACACGCACGC GCGCGCACAC ACACACACAC ACACACACAC ACACGCTCTC CCCGCCGGCA
  TCCCTTGCTC GGCTCCTCGC TCGGCTAGCC CTCGGTTCCT CGCAGCCGCC ACCCCCACCC
  CCAGCTGCCG CCCGCCGGCT CCAGCCGGCC CGGGGAGCCA GGGAGAAGGC CCGGGGGGGA
  K
  GGGGGAGGCT GCATGGCAGC GCTCAGACTC ACCTCGCAGG CCGCCTCCCG AGGCGCACGT
  CGCTGGTGGG TCCTTGCTGC CGGCGTCCCG AGCTGGGACG GTCGCAGTCA AGGCTGGGCT
  GCCGCCGCCG TCGCCGTCGC CGGAGCTGCT AGAGCTGCCG CCGCTGCTCC CGCTCACTGC
  CGTCTCCTCT GCCTCTGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8751411	WI_WGS_X_87043035	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6345360					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:103244206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22895	CpG island 22895	within coordinates
Nexmif	neurite extension and migration factor	within coordinates
Rr693074	regulatory region 693074	within coordinates
Rr693075	regulatory region 693075	507 bp proximal
Tssr161734	transcription start site region 161734	245 bp upstream
Tssr163977	transcription start site region 163977	499 bp downstream
Tssr163978	transcription start site region 163978	526 bp downstream
Tssr163979	transcription start site region 163979	578 bp downstream