rs6345373 SNP Detail

Summary

• ID
  rs6345373
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84431943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCTTTTAGAT
  TAAGGAAAGA AAATAAGGAA AAATGTTTNA AAAAAATTGC ACCCACATAG TAGCTGCTTC
  TCTAGCCAAG CTGTAACACT CACTACAACA GAAAAGGGTG TAATGGAGGC ATGGCCTGAT
  TCCCTGTAGC CTTTCAGAGA TGATGGGAAC TGGGGACGAC TAAGGAGTCA GAGTCACAGC
  ACTCCCTCCT AACAGCCTCA CTTTGAGACT TATCGGGATG GATTTTCACC AATCCCAACT
  S
  CACACTGTTA AGCAGAAGCC TGTTGTGGCT ATGTCAGAGG CTTTAACAAC ACCCAGTAGG
  GACGTGAAGT TCCCTAAGTT ACCACTCCTC TTCTTTGCTT CAGCTACTGG GGGTCAACAG
  TGGGTAAGAA AATAACAAGG TCTAACTTGC AAAATCATGA GAAATGAGAC TGCAGAGGCA
  AAGAAAGGCA CCTGGAAGAG AGGGAGGAGA TGCACCCCAG GCCAAAGGCA CAAAGAAGAG
  GCAAAGCCAG                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8751424	WI_WGS_2_85491059	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6345373					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84431943 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	within coordinates
Gm28635	predicted gene 28635	within coordinates
Tssr25005	transcription start site region 25005	108 bp upstream
Tssr25006	transcription start site region 25006	52 bp upstream