rs6345771 SNP Detail

Summary

• ID
  rs6345771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32739556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCCAAGGACT
  TTGTCCTCCT GAGAGCCAGA ACACATTAAG CTTCTTTGGG CATTGCTGAT CCTTCACTGA
  GAATGATTTT CATTGTGTGC GCTCATACAA TGAGGCAAGA GAAGAGTTGG TTCCTACCAT
  GTATATAGAC AACAAGAAAG AACATGGAAG ATTGNGAGCC TTGCCAGGGA AGAGTGACAT
  CCAGAGAGCA GGTGGAACAG TGTTGCCCTT TCTTTGGTCA AAGCGTTTTG AGGCCAGCTC
  Y
  AGCATTTTTA GTTTGTTGCT CTTCACATTA AACTCCAGAC TTCCAGCAGC CTGAAAACAT
  GGATTATAAT GTGTCCTTGG GTTTGGTTAT TCAAAATGCT TGCTNGTGCC TCTTTGTAGG
  ATGTACGTAA TACACTGTTC CCAGCACTGC TCACAGGAGG CGTTTAAGTC ATCTCTGACC
  CTCAGAAGGC ATTTGGCATT TAGGAAAAAG GCAACTTTAA AATAGTTCCA TTACTTCAGA
  GTCTAGCGCT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8751822	WI_WGS_13_32052479	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6345771					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32739556 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr6	DNA segment, Chr. 13, Case Western Reserve 6	1179 bp distal
Rr275656	regulatory region 275656	1356 bp distal
Rr278919	regulatory region 278919	617 bp distal
Rr278920	regulatory region 278920	16 bp distal