rs6345814 SNP Detail

Summary

• ID
  rs6345814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76545014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAACTCCTCC TGTGTTCAAT TTCCTAAAAG CCATAATCCA GCAAGCTGAA
  Y
  TCATGAGAAG GTCTGCTTCA TGTTGAGCAT GGAAGACAGA ACACAGACGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8751865	WI_WGS_10_77146058	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6345814					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76545014 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr98195	transcription start site region 98195	61 bp upstream
Tssr98196	transcription start site region 98196	118 bp downstream
Tssr98197	transcription start site region 98197	311 bp downstream
Tssr98198	transcription start site region 98198	355 bp downstream
Tssr98199	transcription start site region 98199	462 bp downstream
Tssr98200	transcription start site region 98200	503 bp downstream