rs6345965 SNP Detail

Summary

• ID
  rs6345965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97598530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGATTA GATGGAAGCC
  TTTCCCACTC CTGGACTCTT GCGGCTTAGA CCTCTGTACA CTGAGTGGCC AGACCCTGCC
  CAGCTCCCTG CAGGAGCCAG GTCATGTTCC AAACCAAGTA GTCCGAAGCA AATAAGCAAA
  AAGAAACCAA GAGGGTCTTT TATATCTCCC AAGAAAGAAG TGCTGAGCAA GAGAGGAGCC
  Y
  GTGCAGGAGG AGAGCCGCTC AAGTCCTCCT GGTAAATGCA TGTCCCAGTT ATCTGAGAAG
  GGGTGGAGCC AGCAGGGCCC CCGAAGGTGA GCTGAGCTGA GATCTACCAT GACAGACTTG
  GACAGCAGAA TCACAGAGAT GAAGGGGCCA GCCAAAGCCA CACAGGCAGT TAGTGACAGG
  CCCAGTGCTG AGAGCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8752016	WI_WGS_3_98015716	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6345965					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97598530 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	55 bp downstream
Mir7225	microRNA 7225	652 bp upstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Tssr30803	transcription start site region 30803	375 bp downstream