rs6345997 SNP Detail

Summary

• ID
  rs6345997
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97598544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTTTC CCACTCCTGG
  ACTCTTGCGG CTTAGACCTC TGTACACTGA GTGGCCAGAC CCTGCCCAGC TCCCTGCAGG
  AGCCAGGTCA TGTTCCAAAC CAAGTAGTCC GAAGCAAATA AGCAAAAAGA AACCAAGAGG
  GTCTTTTATA TCTCCCAAGA AAGAAGTGCT GAGCAAGAGA GGAGCCTGTG CAGGAGGAGA
  K
  CCGCTCAAGT CCTCCTGGTA AATGCATGTC CCAGTTATCT GAGAAGGGGT GGAGCCAGCA
  GGGCCCCCGA AGGTGAGCTG AGCTGAGATC TACCATGACA GACTTGGACA GCAGAATCAC
  AGAGATGAAG GGGCCAGCCA AAGCCACACA GGCAGTTAGT GACAGGCCCA GTGCTGAGAG
  CCTTCCCAGG GGCCTAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss8752048	WI_WGS_3_98015730	WI	MOUSE	f	SNP				G		T
ss50996634	NES13919762	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		T		G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs6345997					SNP	G	G	G	G	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996634	NES13919762	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97598544 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	69 bp downstream
Mir7225	microRNA 7225	666 bp upstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Tssr30803	transcription start site region 30803	389 bp downstream