rs6346042 SNP Detail

Summary

• ID
  rs6346042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36533294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTCCC CATCTAATTC
  TCATCTTCTG TTAATTTTTA ACTCGATTTA ACCCAGCATA ATTGCCTACA TGGGATCCTA
  CTTACAGTGT GCCATGGTTA GTAGGAAAGC CGAATAGAAA GTGGTGTCTT TATGGCTGTC
  TTTCCTAGAT TCTGTGCTAA AATGCAGTTA ATTACAAATT ACTGTTATTC TTACATAAAA
  M
  AATGCCACCC CAACATTTCT TCTTCCTAAG ATAGCATGTT AAATTTGGTC CCTGTTCTTT
  AATGTTTAAC TCTTTCCAGC TTTTATTCCG AATGAAAATG AAAACAATCT TTTCAGAGAC
  TTGTGATTAA TTGCTGCAAC AAAACTCTAG GCTGACTGAT ACCTTTGTAA ACATCCACTT
  AACAAAGGAG GACTGTATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8752093	WI_WGS_12_30613052	WI	MOUSE	f	SNP						C		A
ss38901056	mCV22951257	ABI	CRAMUS_MOUSE	f	SNP		A				C
ss61597390	NES17553375	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A		C		C	C	C		C	C	C	C		A
ss137630581	ENSMUSSNP4814498	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss324008684	CHEV_12_37209882	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6346042					SNP	C	A	C	A	A	C	C	A	C	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61597390	NES17553375	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36533294 () rs orientation: forward

Symbol	Name	Function Class
Crppa	CDP-L-ribitol pyrophosphorylase A	Intron
Rr387069	regulatory region 387069	807 bp downstream
Rr465183	regulatory region 465183	130 bp proximal