rs6346127 SNP Detail

Summary

• ID
  rs6346127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAACAGA CGGAACACAG TCTTTAAAAA CAAGGGGTGT
  AAATCCCACC TCAGAAATGG TCAGTGTCTA CCTCAGTCAT CACAGATCCT CAGTATGTTC
  R
  GAAGTGTGGC GCCCATCAAA TGGCCAAGAG AGAAAGCATA TCTGGTTGTA TGCTCAGGAG
  TCAAAGATGA CTGCTGATCA CAGGGATTTC TAAACATCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8752178	WI_WGS_8_116558701	WI	MOUSE	f	SNP								G		A
ss51979474	NES14997608	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A			G	G		A	G	G	A		A
ss145799681	ENSMUSSNP4382073	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G								A
ss322838288	CHEV_8_119096581	CHEVERUD	SCREENING_POP	f	SNP														G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6346127					SNP	G	G	G	G	G	G	G	G	A	A	A	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51979474	NES14997608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299420 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1719 bp downstream
Tssr83067	transcription start site region 83067	789 bp upstream
Tssr83068	transcription start site region 83068	1281 bp downstream