rs6346175 SNP Detail

Summary

• ID
  rs6346175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17662289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAACAGG AGGGAAGCTG
  TGTGATTTGG AGCAGGCTAC TGGTTCCCAA GCCTCAATCC CAGTGTCCCT AGCCAGCTAC
  ATCTGACATG TCACATGAGA CCCTGATTTG GCCAGAACCT CCCATCTCTG GGTCTCTCCA
  ACCAAAGTGC CCTCACCCCA CTTATATGAA AACCTATTCC AGCCCTGTCA TTGGACTGTA
  R
  AAGGAACCTT GCATTGCTAT AGCCCCCAGG TCCAACTCAC TTTTGGGTAT CCATCTACTA
  CAGAAGTAAG TGACCATAAG GCAGACTAGG AGAACTGCTG CCCATGGCCT AGGACACACT
  GCAGACCCTT CACGGAGCAA GTGAAATCCC TTGTAGCTGC TGGCAACTTG CTCCCAACCT
  TCTTATTGCT AAGGAGGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8752226	WI_WGS_16_17315762	WI	MOUSE	f	SNP							G		A
ss48153721	NES12111238	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6346175					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48153721	NES12111238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17662289 () rs orientation: forward

Symbol	Name	Function Class
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Dgcr2	DiGeorge syndrome critical region gene 2	within coordinates
Gm20518	predicted gene 20518	within coordinates