rs6346231 SNP Detail

Summary

• ID
  rs6346231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108223263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCTGAA AAACTACTAC
  CATAAAGCAT CCTAAGATAT ATAGAATGTT TGGCCTAAAG TTATAGGCTG TTGTCACTAT
  TCTTGGTTAC CTTCCAGAAC TTATTTATTT TAAAATTTAT TTTATGTATG CGAGTACAGT
  GTTGCTGTCT TTAGACACAC CAGAAGAGAT TATCAGATGC CCACTATAGA TGGTTGTGAG
  Y
  CACCATGTGG TTGCTGGGAA TTGAACTCAG GACCTCTGGA AGAGCAGTCA GTGTTCTCAA
  CCGCTGAGCC ATCTCTCCAC CCCACCTTCC AAAACTTTAC AGCAAAGTCC CAGTGCTAAG
  GGTACCACAT ACTTGTTATG TGAGAGCTCA AGCTGGTATT GACCTGGAAG CTTCATCTCT
  ACTAGGTAGC TTTTATAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8752282	WI_WGS_3_108808138	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6346231					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108223263 () rs orientation: forward

Symbol	Name	Function Class
Rr583206	regulatory region 583206	1463 bp distal
Rr583207	regulatory region 583207	1484 bp distal
Sort1	sortilin 1	Intron