rs6346380 SNP Detail

Summary

• ID
  rs6346380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32739661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CAAGAGAAGA
  GTTGGTTCCT ACCATGTATA TAGACAACAA GAAAGAACAT GGAAGATTGN GAGCCTTGCC
  AGGGAAGAGT GACATCCAGA GAGCAGGTGG AACAGTGTTG CCCTTTCTTT GGTCAAAGCG
  TTTTGAGGCC AGCTCNAGCA TTTTTAGTTT GTTGCTCTTC ACATTAAACT CCAGACTTCC
  AGCAGCCTGA AAACATGGAT TATAATGTGT CCTTGGGTTT GGTTATTCAA AATGCTTGCT
  S
  GTGCCTCTTT GTAGGATGTA CGTAATACAC TGTTCCCAGC ACTGCTCACA GGAGGCGTTT
  AAGTCATCTC TGACCCTCAG AAGGCATTTG GCATTTAGGA AAAAGGCAAC TTTAAAATAG
  TTCCATTACT TCAGAGTCTA GCGCTCCCAA TGGAATTTTC TTAAGTGAAA AATAAAATTG
  ATGAATCATC TGGGGTAGAT ATTTCCAAGG AAAATTGTGA GTGGCTCACA AGTTCACTTT
  AGGTAGCTCC                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8752431	WI_WGS_13_32052584	WI	MOUSE	f	SNP							G		C
ss49080987	NES12424486	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6346380					SNP	G	G	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49080987	NES12424486	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32739661 () rs orientation: forward

Symbol	Name	Function Class
D13Cwr6	DNA segment, Chr. 13, Case Western Reserve 6	1284 bp distal
Rr275656	regulatory region 275656	1461 bp distal
Rr278919	regulatory region 278919	722 bp distal
Rr278920	regulatory region 278920	121 bp distal