rs6346830 SNP Detail

Summary

• ID
  rs6346830
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAATGG TCAGTGTCTA
  CCTCAGTCAT CACAGATCCT CAGTATGTTC GGAAGTGTGG CGCCCATCAA ATGGCCAAGA
  GAGAAAGCAT ATCTGGTTGT ATGCTCAGGA GTCAAAGATG ACTGCTGATC ACAGGGATTT
  CTAAACATCC CGTGCTATTT CTAGAGAGAA TCCTGACAAC TTGCTTCCCT ATGGACAAAA
  M
  TGGCTTGATC AGAAGCTAAT CAGAAAGGTT TGGGGGAGGT GTTTCCTATA GAGGAGGCAG
  CGATCTGAAA GAGTTACTCA GACATGTAAA GAACAGGAGA TGTCTTAAGG GCGTGGGGTT
  AAGTGTACAT GGAGCTCATC CCAGCAGAGA AGGGACAAGA GGCTCAGGCT CCTTAATTCT
  CTACACCCCA GTCAGCCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8752883	WI_WGS_8_116558851	WI	MOUSE	f	SNP							C		A
ss51979471	NES14997611	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6346830					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51979471	NES14997611	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299570 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1569 bp downstream
Tssr83067	transcription start site region 83067	939 bp upstream
Tssr83068	transcription start site region 83068	1131 bp downstream