rs6346834 SNP Detail

Summary

• ID
  rs6346834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CAGACGGAAC
  ACAGTCTTTA AAAACAAGGG GTGTAAATCC CACCTCAGAA ATGGTCAGTG TCTACCTCAG
  TCATCACAGA TCCTCAGTAT GTTCNGAAGT GTGGCGCCCA TCAAATGGCC AAGAGAGAAA
  GCATATCTGG TTGTATGCTC AGGAGTCAAA GATGACTGCT GATCACAGGG ATTTCTAAAC
  ATCCCGTGCT ATTTCTAGAG AGAATCCTGA CAACTTGCTT CCCTATGGAC AAAANTGGCT
  Y
  GATCAGAAGC TAATCAGAAA GGTTTGGGGG AGGTGTTTCC TATAGAGGAG GCAGCGATCT
  GAAAGAGTTA CTCAGACATG TAAAGAACAG GAGATGTCTT AAGGGCNTGG GGTTAAGTGT
  ACATGGAGCT CATCNCAGCA GAGAAGGGAC AAGAGGCTCA GGCTCCTTAA TTCTCTACAC
  CCCAGTCAGC CCACAGCTCC TACAGTGTTC TATAGGGACT CCAGGGGGNC ACATGCTCCA
  ATTNCTTTTT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8752887	WI_WGS_8_116558857	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6346834					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299576 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1563 bp downstream
Tssr83067	transcription start site region 83067	945 bp upstream
Tssr83068	transcription start site region 83068	1125 bp downstream