rs6347274 SNP Detail

Summary

• ID
  rs6347274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25601255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCAATGTCCC
  AAGACATATT TGTTTATTGT ATCTCAGATG TTGCGGAGGT CAGCAAAACT GTCAGATAAC
  ATCCAATCCA CAAGACAGCT CTCAACAGCC CAGGAGAAAC CACCGAATCG CCTAAGTGCT
  GAGATTGAGA GTCCATAGAA GACAGGTATT TGTTTCCAAT CAACTTCACT GAAACTCATT
  AACCTCAATA TAAAGCAGAG GTCAGGATTC ATTTCACAAG TGTCACTGTG TAGTTATACT
  Y
  AACAGAAAAA CAGTGTTCAC ACTGAATTGT TGGTTTNGGA TATTTTAAAG AAATCACTTT
  TTTTGATGAT GTTTTCAAGT GAGTGTGTGG TCCATTTGAT TAGGTTGGCT CTCTCTACAG
  AAATGACTAC ATANTGATTA TTTTGACAAT TTTTAAATAT AGGGTATAAG AACACCAGGA
  TGATGCTTAT AAATGTTGTT CCTGAAATAG AAGATAAAGA AATAGAAACT ATGCATTGAN
  TGTCTGAAAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8753327	WI_WGS_3_25368568	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6347274					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25601255 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	937 bp downstream
Nlgn1	neuroligin 1	within coordinates