rs6347440 SNP Detail

Summary

• ID
  rs6347440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATGACT GCTGATCACA
  GGGATTTCTA AACATCCCGT GCTATTTCTA GAGAGAATCC TGACAACTTG CTTCCCTATG
  GACAAAACTG GCTTGATCAG AAGCTAATCA GAAAGGTTTG GGGGAGGTGT TTCCTATAGA
  GGAGGCAGCG ATCTGAAAGA GTTACTCAGA CATGTAAAGA ACAGGAGATG TCTTAAGGGC
  R
  TGGGGTTAAG TGTACATGGA GCTCATCCCA GCAGAGAAGG GACAAGAGGC TCAGGCTCCT
  TAATTCTCTA CACCCCAGTC AGCCCACAGC TCCTACAGTG TTCTATAGGG ACTCCAGGGG
  GCCACATGCT CCAATTTCTT TTTCCTGTGA CCAAATACAG CCAAGGTGAC TGTACTCTCA
  GGCTCCCCAT GGCCAAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8753493	WI_WGS_8_116558964	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6347440					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299683 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1456 bp downstream
Tssr83067	transcription start site region 83067	1052 bp upstream
Tssr83068	transcription start site region 83068	1018 bp downstream