rs6347490 SNP Detail

Summary

• ID
  rs6347490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTCCTATA GAGGAGGCAG CGATCTGAAA GAGTTACTCA
  GACATGTAAA GAACAGGAGA TGTCTTAAGG GCGTGGGGTT AAGTGTACAT GGAGCTCATC
  M
  CAGCAGAGAA GGGACAAGAG GCTCAGGCTC CTTAATTCTC TACACCCCAG TCAGCCCACA
  GCTCCTACAG TGTTCTATAG GGACTCCAGG GGGCCACAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss8753543	WI_WGS_8_116558992	WI	MOUSE	f	SNP									C							A
ss16378260	08.116.156	TWGNF	TWGNF-Mouse-2	f	SNP	C	C		C	C	C	C	C		C	C	C	C	A	A	A	A	A	C	C			C	C	A	A	A	C	C		C	C	A		C	C	A	C	A	A	C	C	A
ss46168764	mCV23596318	ABI	CRAMUS_MOUSE	f	SNP		C	C						C									A
ss51979470	NES14997612	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C						A						C	C					A		C		C				A									A
ss145799697	ENSMUSSNP952568	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C															A
ss322838292	CHEV_8_119096872	CHEVERUD	SCREENING_POP	f	SNP																						C																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs6347490					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	A	A	A	C	C	C	C	C	C	A	A	A	C	C	C	C	C	A	A	C	C	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51979470	NES14997612	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299711 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1428 bp downstream
Tssr83067	transcription start site region 83067	1080 bp upstream
Tssr83068	transcription start site region 83068	990 bp downstream