rs6347734 SNP Detail

Summary

• ID
  rs6347734
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25601292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATGTTGCGGA
  GGTCAGCAAA ACTGTCAGAT AACATCCAAT CCACAAGACA GCTCTCAACA GCCCAGGAGA
  AACCACCGAA TCGCCTAAGT GCTGAGATTG AGAGTCCATA GAAGACAGGT ATTTGTTTCC
  AATCAACTTC ACTGAAACTC ATTAACCTCA ATATAAAGCA GAGGTCAGGA TTCATTTCAC
  AAGTGTCACT GTGTAGTTAT ACTNAACAGA AAAACAGTGT TCACACTGAA TTGTTGGTTT
  K
  GGATATTTTA AAGAAATCAC TTTTTTTGAT GATGTTTTCA AGTGAGTGTG TGGTCCATTT
  GATTAGGTTG GCTCTCTCTA CAGAAATGAC TACATANTGA TTATTTTGAC AATTTTTAAA
  TATAGGGTAT AAGAACACCA GGATGATGCT TATAAATGTT GTTCCTGAAA TAGAAGATAA
  AGAAATAGAA ACTATGCATT GANTGTCTGA AAAGTAATCT CTTTGGTGAA GAATCAGATC
  TTGAGAATGG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8753787	WI_WGS_3_25368605	WI	MOUSE	f	SNP						T	G
ss46856758	NES10839435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T			T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6347734					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46856758	NES10839435	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25601292 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	974 bp downstream
Nlgn1	neuroligin 1	within coordinates