rs6348002 SNP Detail

Summary

• ID
  rs6348002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCAGG ATGCACGAGC
  CATGACTTCT GCTTTCTAGA AGGTTCTTTT GCAGCTCCTC CTCCTGCCAT TCTTTAGACT
  TCTATTGTCC TGGGTTAATT TGCTTCTTAT AAACTCCACC CAGGACTTCT CCATTTACCC
  TGATGAGGAA GCTGGGGCTC AGAGGTGAAG CACCTGTCCC AGGTACCTCA TCTTCTAAGT
  R
  GCAAAAGGCC CACACGCCTT CTTACCGTAT CCTGAGCTGG CTATGGGGTG TCAGGCCAGT
  AAGAGTCCCT AAGCTGTAGT ATACCCACAA AAATGTTCCT TTTCTTCAAA GCGAGCTGAA
  TGTTGGCAGA CTGTCAGCCT TTTAAAATCG GCTCAGCCCC AGCCAGTGGA CCCGGTCAGC
  CTTGGCAGCC CTGCACGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8754055	WI_WGS_17_25806022	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6348002					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840070 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523902	regulatory region 523902	630 bp distal
Rr523903	regulatory region 523903	within coordinates
Rr523904	regulatory region 523904	364 bp proximal
Tssr143257	transcription start site region 143257	416 bp upstream