rs6348140 SNP Detail

Summary

• ID
  rs6348140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12741733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCTGAT GGAAGTCACC
  TTCAGTCGGG GTGAAATGCA CTCTCTGGTC TTCTAAAAGC TTGGTTAACA TCCCTTGGAA
  GGTACGGTAA GCCTGGAGGT TCTCTTGGAG TCGCTCTGCC TCAGTCATCT CACTCCAGCG
  ATCAGTGCTT GCCACTGGTA CACCATCCAC TGAGTCAAGG CTGATATTTT TATTCAGGCC
  Y
  TGATGTTTTA CCTGGCCAAG GATATAGCAA AACATATGTT CCATATCATC TCAATTTCCT
  TCTTCAATCA CAAATACAAT TTCCTTGACT TTCATAGTCA GTGATCCAAG TTGTTAAGAA
  AATGCTTAGA ATGGAAACCC TTCATATGGG GAGTCCTGAT CCCACAGCAC TGCCTGAATT
  TCCCTATGCC CACTGTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8754194	WI_WGS_19_12295394	WI	MOUSE	f	SNP							T		C
ss50620936	NES13637999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6348140					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620936	NES13637999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12741733 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	within coordinates
Gm44505	predicted readthrough transcript (NMD candidate), 44505	within coordinates
Rr356731	regulatory region 356731	1733 bp distal
Rr361368	regulatory region 361368	1792 bp distal
Tssr158445	transcription start site region 158445	1049 bp downstream
Tssr158446	transcription start site region 158446	1078 bp downstream