rs6348296 SNP Detail

Summary

• ID
  rs6348296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25601389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTGAGAGTCC
  ATAGAAGACA GGTATTTGTT TCCAATCAAC TTCACTGAAA CTCATTAACC TCAATATAAA
  GCAGAGGTCA GGATTCATTT CACAAGTGTC ACTGTGTAGT TATACTNAAC AGAAAAACAG
  TGTTCACACT GAATTGTTGG TTTNGGATAT TTTAAAGAAA TCACTTTTTT TGATGATGTT
  TTCAAGTGAG TGTGTGGTCC ATTTGATTAG GTTGGCTCTC TCTACAGAAA TGACTACATA
  Y
  TGATTATTTT GACAATTTTT AAATATAGGG TATAAGAACA CCAGGATGAT GCTTATAAAT
  GTTGTTCCTG AAATAGAAGA TAAAGAAATA GAAACTATGC ATTGANTGTC TGAAAAGTAA
  TCTCTTTGGT GAAGAATCAG ATCTTGAGAA TGGTTACAGT AATAACGATG AATTAACGAA
  CCATCTCTAA AAACATGCAA TCTCTGTGTA ATCGTCTTTC TGCCTGCATA TGTGCAAAGG
  CTCTNAAATA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8754350	WI_WGS_3_25368702	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6348296					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25601389 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	1071 bp downstream
Nlgn1	neuroligin 1	within coordinates