rs6348511 SNP Detail

Summary

• ID
  rs6348511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103212558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATGTGT ATATACTTCA
  GTTTGAAATG TTGGAAAGTT GTTTTCTGCA TCTTAGAACT CTTTCTTTCC TTAGATATGT
  AAATACTGAC ATATTCAAGT GTTCTGTATC TAGGCTGGGG ACTTAATGTC CTTATGGATG
  CTAGGTAAGC TTTCCATCAC TGAGATACAC CCGCACCCAG CTCAAGTCTT CTGTCCTTTA
  Y
  TTCTTTAGTA ATCAAAGTGG TTCAGTTGAA AATCAAATTA AATAGTATTT ATCCAAAACC
  TACTTGTTAC ATTTTGACTA AAAAACCCTC TTCCTTATTG AATAATGGTG TATTTTTTTT
  TAGTGAAAAT TAACCACATA GAAACCTAAT AATCATCTAG AATTCTTAAT TTTCTTAGCT
  GTAATCTTAC TGCATTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8754566	WI_WGS_3_103414082	WI	MOUSE	f	SNP							T	C
ss46821791	NES10702806	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T			T	T	T		C	C	C		T
ss320856881	CHEV_3_103109165	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6348511					SNP	T	T	T	C	T	T	T	C	T	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46821791	NES10702806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103212558 () rs orientation: forward

Symbol	Name	Function Class
Rr69849	regulatory region 69849	1758 bp distal
Rr69850	regulatory region 69850	443 bp proximal
Trim33	tripartite motif-containing 33	within coordinates