rs6348549 SNP Detail

Summary

• ID
  rs6348549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACTTCTATTG
  TCCTGGNTTA ATTTGCTTCT TATAAACTCC ACCCAGGACT TCTCCATTTA CCCTGATGAG
  GAAGCTGGGG CTCAGAGGTG AAGCACCTGT CCCAGGTACC TCATCTTCTA AGTNGCAAAA
  GGCCCACACG CCTTCTTACC GTATCCTGAG CTGGCTATGG GGTGTCAGGC CAGTAAGAGT
  CCCTAAGCTG TAGTATACCC ACAAAAATGT TCCTTTTCTT CAAAGCGAGC TGAATGTTGG
  Y
  AGACTGTCAG CCTTTTAAAA TCGGCTCAGC CCCAGCCAGT GGACCCGGTC AGCCTTGGCA
  GCCCTGCACG GACGGCTGAG GCTGCACCTG GGGTGGCAGG AAACTAGCTG GCCTGGAACA
  TTTCCCTTGG ACACAGAAGG CAGCCGTGCT GACCTCATCT GTAGGCGGTG CAGACAACTG
  AACCATATAC ATCTTACAGG CAGGGGAACA GCCAGTTCTG CCCTTACATA ACCACTGGCC
  CAGGTTGCCA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8754604	WI_WGS_17_25806149	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6348549					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840197 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523902	regulatory region 523902	757 bp distal
Rr523903	regulatory region 523903	within coordinates
Rr523904	regulatory region 523904	237 bp proximal
Tssr143257	transcription start site region 143257	289 bp upstream