rs6348649 SNP Detail

Summary

• ID
  rs6348649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101422595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTGGGGCCG
  ATGGGAGCGA Gcagaggttc tacagattca attcccaaca actacatgaa ggctcacaac
  catctgtaca gctacagtgt actcatatac ataaaataaa taaataaatc ttaaaaaaaa
  aaaaGCTGAT GGTGACCCGG AAACAGAAAC AGGAAGAGGC CACGCTCTCA GCATCTCTCT
  GAGAACACAC CCCAGTGATT TATCTACACT CGTTCTACCT CCCANAGGTT CTACCATGTC
  Y
  CAATAGTGTC CCAAGCTGAG GACCAAGGTT TCAACATACC GTTCTGGGTA CTTATCTCAG
  CTGTTCTGCA AAGCTCTGTG TCGATCTAAG ACCTGTGAGC TTAGATCGAA ACAGTGATTT
  GCCAGACTCA GAAGAGAACT TCAGTGTCGT GGCCTCGACT CAATGGATCA TCTTTTACTG
  GTGAAAAAAA GTATCATTTC TAAATGGGTC AGTTGTTTCC TGTGGGTGAA ATTGTTGTCA
  GCTCCTATAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8754704	WI_WGS_3_101624474	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6348649					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101422595 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Rr582065	regulatory region 582065	703 bp distal
Rr582066	regulatory region 582066	1133 bp proximal
Rr582067	regulatory region 582067	1796 bp proximal