rs6348833 SNP Detail

Summary

• ID
  rs6348833
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25601495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTAAA GAAATCACTT
  TTTTTGATGA TGTTTTCAAG TGAGTGTGTG GTCCATTTGA TTAGGTTGGC TCTCTCTACA
  GAAATGACTA CATATTGATT ATTTTGACAA TTTTTAAATA TAGGGTATAA GAACACCAGG
  ATGATGCTTA TAAATGTTGT TCCTGAAATA GAAGATAAAG AAATAGAAAC TATGCATTGA
  S
  TGTCTGAAAA GTAATCTCTT TGGTGAAGAA TCAGATCTTG AGAATGGTTA CAGTAATAAC
  GATGAATTAA CGAACCATCT CTAAAAACAT GCAATCTCTG TGTAATCGTC TTTCTGCCTG
  CATATGTGCA AAGGCTCTTA AATAAATGTA ATATTATAAT TTAATAGTCA ACCTTAATAG
  TATCTCTATT TCTTATGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8754888	WI_WGS_3_25368808	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6348833					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25601495 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	1177 bp downstream
Nlgn1	neuroligin 1	within coordinates