rs6349480 SNP Detail

Summary

• ID
  rs6349480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25601634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATGCTT ATAAATGTTG
  TTCCTGAAAT AGAAGATAAA GAAATAGAAA CTATGCATTG ACTGTCTGAA AAGTAATCTC
  TTTGGTGAAG AATCAGATCT TGAGAATGGT TACAGTAATA ACGATGAATT AACGAACCAT
  CTCTAAAAAC ATGCAATCTC TGTGTAATCG TCTTTCTGCC TGCATATGTG CAAAGGCTCT
  Y
  AAATAAATGT AATATTATAA TTTAATAGTC AACCTTAATA GTATCTCTAT TTCTTATGAC
  AATTTCTTTA GTTTCACTTT GCCTAATTAA CCATTGTATG CTGTCTTAAT TTTTATTTCT
  AAGTCACATC AAATTTTCTT AGAGATCGTT GACTTATTTT ATTTGAAATT GTTTTTAGTT
  TGTTAAGATT TGTTCAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8755537	WI_WGS_3_25368947	WI	MOUSE	f	SNP	T	C
ss320686441	CHEV_3_25446392	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6349480					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25601634 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	1316 bp downstream
Nlgn1	neuroligin 1	within coordinates