rs6349542 SNP Detail

Summary

• ID
  rs6349542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:25601668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGTATAAGAA
  CACCAGGATG ATGCTTATAA ATGTTGTTCC TGAAATAGAA GATAAAGAAA TAGAAACTAT
  GCATTGANTG TCTGAAAAGT AATCTCTTTG GTGAAGAATC AGATCTTGAG AATGGTTACA
  GTAATAACGA TGAATTAACG AACCATCTCT AAAAACATGC AATCTCTGTG TAATCGTCTT
  TCTGCCTGCA TATGTGCAAA GGCTCTNAAA TAAATGTAAT ATTATAATTT AATAGTCAAC
  Y
  TTAATAGTAT CTCTATTTCT TATGACAATT TCTTTAGTTT CANTTTGCCT AATTANCCAT
  TGTATGCTGT CTTAATTTTT ATTTCTAAGT CACATCAAAT TTTCTTAGAG ATCGTTGACT
  TATTTTATTT GAAATTGTTT TTAGTTTGTT AAGATTNNTT CAGTGACTAT ATCATTTTTT
  ACAGAGTACT GACAGGCTGA AAGATCATAA AATATAAACT TAACTGACCT TGCATGTGAA
  GATAACTTCA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8755600	WI_WGS_3_25368981	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6349542					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:25601668 () rs orientation: forward

Symbol	Name	Function Class
Gm55653	predicted gene, 55653	1350 bp downstream
Nlgn1	neuroligin 1	within coordinates