rs6349646 SNP Detail

Summary

• ID
  rs6349646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103212759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTAGTA ATCAAAGTGG
  TTCAGTTGAA AATCAAATTA AATAGTATTT ATCCAAAACC TACTTGTTAC ATTTTGACTA
  AAAAACCCTC TTCCTTATTG AATAATGGTG TATTTTTTTT TAGTGAAAAT TAACCACATA
  GAAACCTAAT AATCATCTAG AATTCTTAAT TTTCTTAGCT GTAATCTTAC TGCATTATCA
  Y
  TATGAAGTAA TTCCTTTATG TTCTGTGTGT ATGAATTTTG CCTGTTGTTC CCCAGAAGCT
  GTATCCTTTG CCTTTTTAAA AAGTGTGCGC GTGCGTGCTA TGCGTCAGCC AGGAAGAACT
  GTGTATGTTC ACATGGGGGA AGACAGAAAG ATAAGAACTA GATCCTGAAG CAAGAGGTCA
  CTAATCTCTT CAGTAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8755704	WI_WGS_3_103414283	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6349646					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103212759 () rs orientation: forward

Symbol	Name	Function Class
Rr69849	regulatory region 69849	1959 bp distal
Rr69850	regulatory region 69850	242 bp proximal
Trim33	tripartite motif-containing 33	within coordinates