rs6349685 SNP Detail

Summary

• ID
  rs6349685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12741965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA AATCAATCCT TTAGAATACA
  R
  CTGGCTTTTA TGTCCATCTC TTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8755743	WI_WGS_19_12295626	WI	MOUSE	f	SNP								G		A
ss39694174	mCV23019257	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G			A
ss50620930	NES13638002	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		A		A	G	G	A	G	G	A	G
ss146065404	ENSMUSSNP2937592	ENSEMBL	ENSEMBL_Sanger	f	SNP			G								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6349685					SNP	G	G	G	G	G	G	A	G	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620930	NES13638002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12741965 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	within coordinates
Gm44505	predicted readthrough transcript (NMD candidate), 44505	within coordinates
Rr356731	regulatory region 356731	1965 bp distal
Tssr158445	transcription start site region 158445	817 bp downstream
Tssr158446	transcription start site region 158446	846 bp downstream