rs6350727 SNP Detail

Summary

• ID
  rs6350727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101422961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATCTTT TACTGGTGAA
  AAAAAGTATC ATTTCTAAAT GGGTCAGTTG TTTCCTGTGG GTGAAATTGT TGTCAGCTCC
  TATATCGCAG CATATGTCAT AGCGTGTCCG TTTATGTCAA TTTCAGATAC AGCAGATGGC
  CACATCTATG TCCATGACAC CGTCAGATTG ACTTGTTTAG AAAGTTTACT CAAAACTCAG
  Y
  TCAGTAGCCT TGGTGACATG CTTAGTCTGT TGTCAGAGGT AGCACGAGGC CATTCAGAAA
  TGCAGAGATT CAAGGTCTCT GGCCCTGGAG AATCTCGCTA GCCGCCAGAC ACATGTTTAA
  GGGCAGAGAA CACATGGAAT CCTTGCTCTC GTGCTGGCTG TGTGTTAACA CGTGGGACTG
  TGAAAATACA GGCATGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8756786	WI_WGS_3_101624840	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6350727					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101422961 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Rr582065	regulatory region 582065	1069 bp distal
Rr582066	regulatory region 582066	767 bp proximal
Rr582067	regulatory region 582067	1430 bp proximal