rs6350801 SNP Detail

Summary

• ID
  rs6350801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121324107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCATACC ACAACCCTGC
  CTACTCGTTC AGCTGTAAAT AATAAACACA CTGATGTTCT GGGATCTTGA AACTTCTCCA
  TCAGACATCC TTCCCGGCTT TTCTGTGTGT TCATGTGTGT TTTTTCCTTC ATTCCCTCAC
  TACCCTAATT AGGTCAGTCC CTGGAGTTGT GTAAGACTCC GCACAGAGGG AAGACACGGA
  Y
  ACTGCACTTG GCTTTAGAAT CAGGTTAGAA AAGGTCGTTG GGGTAGAACC CTGGCTCTGC
  AGTCCGCCAC TCTGGCTACC ATGATTAGGA ATGATCAAGC CACATTAGGA GGCCATATCA
  GTCAATGTTC CTTGCCTGAG TGTGTGCCCA GGTTCCAATC ATCCCACATA GCTGCCAGAT
  GCAGGAGTTA TTCAAGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8756860	WI_WGS_11_122374160	WI	MOUSE	f	SNP							C		T
ss37236105	NES08513817	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6350801					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236105	NES08513817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121324107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1526 bp proximal
Fn3k	fructosamine 3 kinase	1672 bp upstream
Fn3krp	fructosamine 3 kinase related protein	1993 bp downstream
Rr461974	regulatory region 461974	within coordinates
Rr461975	regulatory region 461975	1142 bp proximal
Tssr106404	transcription start site region 106404	1667 bp upstream