rs6351336 SNP Detail

Summary

• ID
  rs6351336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81200684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CTTGTACCAG GCATCACCAG
  R
  TTCTGAGTTG GTCAGGCCGG TGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8757396	WI_WGS_10_81839656	WI	MOUSE	f	SNP							G		A
ss52387632	NES15272383	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6351336					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387632	NES15272383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81200684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	within coordinates
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Rr435631	regulatory region 435631	956 bp proximal
Tektip1	tektin bundle interacting protein 1	within coordinates
Tssr94743	transcription start site region 94743	812 bp downstream
Tssr94744	transcription start site region 94744	549 bp downstream
Tssr94745	transcription start site region 94745	478 bp downstream
Tssr94746	transcription start site region 94746	436 bp downstream
Tssr94747	transcription start site region 94747	424 bp downstream
Tssr98595	transcription start site region 98595	within coordinates
Tssr98596	transcription start site region 98596	934 bp downstream
Tssr98597	transcription start site region 98597	957 bp downstream
Tssr98598	transcription start site region 98598	984 bp downstream