rs6352386 SNP Detail

Summary

• ID
  rs6352386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121324438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCTGAG TGTGTGCCCA
  GGTTCCAATC ATCCCACATA GCTGCCAGAT GCAGGAGTTA TTCAAGAGCC TCTAGGGAAC
  CCAGTCTCAG TCTGAGCCCA TGACAGGTCA CAAGGACCCT GGGGATGGCC AGCACTGACA
  GGCTTTGCCC CTCTGAGGTA TGACAGAGCT CCTAAGATAG GCTCCTCAAT GAGGGCTATG
  Y
  CTACCGAAAA CCCATGCAAA TGTTATCTCT TCATGTGCTT TGGGCGTCAT CTTAGTGTGA
  GGCTGGTCGA TAAAGGAACA GCTGTAGAAC TGTCAGCTGG CAGGCCATGA GAAAAACATT
  GAGCAGCACA GTGCAGCCAG GTCTTCTTGA CACATGCTGG GAAGAGTCTT ATCCCGCTAG
  GGCCTGAGAC TAGAATTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8758450	WI_WGS_11_122374491	WI	MOUSE	f	SNP							C		T
ss37236104	NES08513780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6352386					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236104	NES08513780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121324438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1195 bp proximal
Fn3k	fructosamine 3 kinase	1341 bp upstream
Rr461974	regulatory region 461974	190 bp distal
Rr461975	regulatory region 461975	811 bp proximal
Tssr106404	transcription start site region 106404	1336 bp upstream