rs6352836 SNP Detail

Summary

• ID
  rs6352836
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81200954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCACGGCT TGTTTGATGG
  CCGGCGCCCA ACGGGGCCCC TCCAGGGACA CGTAGTCATT GCTGAGGGAG GGTGGGGACT
  GAGCCAGGGC GTCCTGCTGG TCCCAGCCAG CTTTCCTGTC CCAACTCTTT GCCAAGGTGC
  TGGGTGAGAG TCATCCCCTT CTACCCATCT CCTCTGTGCA CTTTCCCACC TGCAGTCTAT
  W
  TCTTGTAGCC GAGAATGGCC CTGTTTGAGG CAGTTGTCAG TGTTGACCTG GCAGCAATCC
  TGCCTCAGCC TTGAGCCACT TATGGCTGTT GGGGGAAGGA GGGACCAAGG GTGTGCCTAG
  CCTGTAACTC CCCACAGATG GTGCATGCAT GGGAGGCCAT GCAGGCTGCA GGAGTGGGGC
  TTGCAAGGGA CCCACGTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8758901	WI_WGS_10_81839926	WI	MOUSE	f	SNP							A		T
ss52387626	NES15272389	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		T		A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6352836					SNP	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387626	NES15272389	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81200954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	within coordinates
Fzr1	fizzy and cell division cycle 20 related 1	1759 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Rr435631	regulatory region 435631	686 bp proximal
Tektip1	tektin bundle interacting protein 1	within coordinates
Tssr94743	transcription start site region 94743	1082 bp downstream
Tssr94744	transcription start site region 94744	819 bp downstream
Tssr94745	transcription start site region 94745	748 bp downstream
Tssr94746	transcription start site region 94746	706 bp downstream
Tssr94747	transcription start site region 94747	694 bp downstream
Tssr98595	transcription start site region 98595	261 bp upstream
Tssr98596	transcription start site region 98596	664 bp downstream
Tssr98597	transcription start site region 98597	687 bp downstream
Tssr98598	transcription start site region 98598	714 bp downstream