rs6353100 SNP Detail

Summary

• ID
  rs6353100
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAGGAC CCGACCCTGA
  CTTGGCCCCA AGCAACTATG CCTAGAACTC CAGCTTCCTT AAAGTCCACC CGGAATCAGC
  TATTCTCCTA GAGCCTGTAC GTTTAGAAGG CGGCTCCCTG GGAATAGAAG GGGCTGCCTT
  CTCCCTGTTG CAGGAATTTA AGGGGTCAGT TAAATGCAGC CATTGTCTTT CGGGGGAGCC
  M
  GAGGGCCCTG GAATAACCAC ACAACCCTTG AGGGAGAGTG GTGCTCCCCT GTCCTTTCAG
  GGCAGATTCG GCCTGGGGTC CCGCGGAATA AGTCTCCGCC TCCAGCCTGC AAGACTGCAG
  AGGTCTGGTC CTCCCCCCAA AGAGGTGGGG CCCCCGGGAA AGTGCAGCTT GAAGACCAAG
  ACAACTCTTG AGGAAACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8759165	WI_WGS_4_129620831	WI	MOUSE	f	SNP	A	C
ss321330378	CHEV_4_131630282	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6353100					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	23 bp proximal
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	330 bp upstream
Rr1070	regulatory region 1070	902 bp upstream
Rr600863	regulatory region 600863	1161 bp distal
Rr600864	regulatory region 600864	within coordinates
Rr600865	regulatory region 600865	341 bp proximal
Rr600866	regulatory region 600866	915 bp proximal
Tssr39361	transcription start site region 39361	1237 bp upstream
Tssr43633	transcription start site region 43633	883 bp downstream
Tssr43634	transcription start site region 43634	932 bp downstream
Tssr43635	transcription start site region 43635	1050 bp downstream