rs6353381 SNP Detail

Summary

• ID
  rs6353381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98398998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGAGAA GTAGCGCTGG
  CTTGCTAAGT TACACAAATG AAGAACAGCA TTGGCGGGGA CGTGCAAGGG AAGACAGAAC
  AAGCAATGAG ATGCTATGAA AACGAATGTT AGGAAAATCA CTGGACCAAG TCAGGACCTA
  AGAAACTGGG ATTCACGGAA TAACAGGCAT TACGACACAA GGTGTGATCA AATAAACCCT
  R
  AAGGGTACTG AGAACATGTA AGAGGGAGAT GTTTAATTCT ACCTGGACAT AATGTCATTT
  CAGCGGGGTC TCTAAGCATA ATGTGGCACG ATGGGCACAA AAGAAGCAGA GCGGAGGTGC
  AGAGAGGGAC GAATACCCAG CCATCCTCAA ATCACTAAAA CAGAATTCTG TCCTTGGCCT
  TGGAGAAGAG ATTGCTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8759446	WI_WGS_13_95612200	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6353381					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98398998 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	586 bp upstream
Cpgi5999	CpG island 5999	186 bp proximal
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	615 bp upstream
Tssr120795	transcription start site region 120795	697 bp upstream
Tssr120796	transcription start site region 120796	772 bp upstream
Tssr120797	transcription start site region 120797	836 bp upstream
Tssr123622	transcription start site region 123622	456 bp downstream
Tssr123623	transcription start site region 123623	536 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates