rs6353520 SNP Detail

Summary

• ID
  rs6353520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4537576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAAAGAT GGTAGATCTG
  GGCAACCTGG CCCAGTCGGG CCTGCTGGTG TTCGTGGTTC TCAGGGTAGC CAAGGTCCCG
  CTGTAAGTAT GACTTGGAAG GGTAGTTTAG GGCCTCCCTG ACCAAAGAAA TGCTTCCTTC
  AGACTAAACT GACAAGAATT TGATAGCACA CAGGAGTAGA TCCACGTCAG TAGCTCTCTG
  R
  AAAGTTTGTT AACTGTATAT GATGGGCTTC TTCAAACCAC TGCTTTGAGA CTGTGATCAA
  GTAGTCTGTT TACATAAGGT TGTTTCTTTC TCTCGTATTA GAGCACGTAC TGATACAAAG
  CACACTTGAA ACTTTCCTGT CCTGGCTGCC TCTCCCACTC TGAGCCAGTT TAAAATGGTC
  TCTCTGACTC TTACTTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8759585	WI_WGS_6_4241589	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6353520					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4537576 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	Intron
Tssr1769	transcription start site region 1769	395 bp upstream
Tssr1770	transcription start site region 1770	1079 bp upstream
Tssr54726	transcription start site region 54726	197 bp upstream
Tssr54727	transcription start site region 54727	269 bp upstream
Tssr54728	transcription start site region 54728	368 bp upstream
Tssr54729	transcription start site region 54729	414 bp upstream
Tssr54730	transcription start site region 54730	1040 bp upstream
Tssr54731	transcription start site region 54731	1095 bp upstream
Tssr54732	transcription start site region 54732	1115 bp upstream
Tssr54733	transcription start site region 54733	1891 bp upstream
Tssr54734	transcription start site region 54734	1902 bp upstream
Tssr54735	transcription start site region 54735	1916 bp upstream
Tssr54736	transcription start site region 54736	1940 bp upstream
Tssr54737	transcription start site region 54737	1962 bp upstream
Tssr54738	transcription start site region 54738	2000 bp upstream