rs6353981 SNP Detail

Summary

• ID
  rs6353981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91732824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTACTTGGAA GAAGACATGG GTGGTAGTCA GTGGGACTGG CTGAACCACC
  R
  TGGGTATTAC AGGCAGGGAT GGGACGTCTG AATGTCTGGT GAGGATGTGG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8760046	WI_WGS_6_92535636	WI	MOUSE	f	SNP							A		G
ss51366837	NES13739714	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6353981					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366837	NES13739714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91732824 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	571 bp upstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	1274 bp upstream
Tssr57746	transcription start site region 57746	863 bp downstream
Tssr57747	transcription start site region 57747	669 bp downstream
Tssr57748	transcription start site region 57748	154 bp upstream
Tssr57749	transcription start site region 57749	300 bp upstream
Tssr57750	transcription start site region 57750	650 bp upstream
Tssr57751	transcription start site region 57751	751 bp upstream
Tssr57752	transcription start site region 57752	1140 bp upstream
Tssr57753	transcription start site region 57753	1976 bp upstream
Tssr62094	transcription start site region 62094	606 bp upstream