rs6354093 SNP Detail

Summary

• ID
  rs6354093
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4537685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCTCCCT GACCAAAGAA
  ATGCTTCCTT CAGACTAAAC TGACAAGAAT TTGATAGCAC ACAGGAGTAG ATCCACGTCA
  GTAGCTCTCT GAAAAGTTTG TTAACTGTAT ATGATGGGCT TCTTCAAACC ACTGCTTTGA
  GACTGTGATC AAGTAGTCTG TTTACATAAG GTTGTTTCTT TCTCTCGTAT TAGAGCACGT
  W
  CTGATACAAA GCACACTTGA AACTTTCCTG TCCTGGCTGC CTCTCCCACT CTGAGCCAGT
  TTAAAATGGT CTCTCTGACT CTTACTTCAC AGGGTCCCCC TGGTCCCCCT GGACCTCCTG
  GTCCTCCTGG TGTCAGCGGA GGTGGCTATG ACTTTGGTTT TGAAGGAGAC TTCTACAGGG
  CTGACCAGCC TCGCTCCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8760158	WI_WGS_6_4241698	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354093					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4537685 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	286 bp upstream
Tssr1770	transcription start site region 1770	970 bp upstream
Tssr54726	transcription start site region 54726	88 bp upstream
Tssr54727	transcription start site region 54727	160 bp upstream
Tssr54728	transcription start site region 54728	259 bp upstream
Tssr54729	transcription start site region 54729	305 bp upstream
Tssr54730	transcription start site region 54730	931 bp upstream
Tssr54731	transcription start site region 54731	986 bp upstream
Tssr54732	transcription start site region 54732	1006 bp upstream
Tssr54733	transcription start site region 54733	1782 bp upstream
Tssr54734	transcription start site region 54734	1793 bp upstream
Tssr54735	transcription start site region 54735	1807 bp upstream
Tssr54736	transcription start site region 54736	1831 bp upstream
Tssr54737	transcription start site region 54737	1853 bp upstream
Tssr54738	transcription start site region 54738	1891 bp upstream
Tssr54739	transcription start site region 54739	1906 bp upstream
Tssr54740	transcription start site region 54740	1970 bp upstream