rs6354097 SNP Detail

Summary

• ID
  rs6354097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60165277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCACTG TCACAAATGC
  TCAGAATTCT GTAGTAGCAA TGCATTTCCT ATACATCATC ATCTTTAAAA AGCAACACTT
  CTTGCCATGG CTTTAGTTTA GACACATGCT CCCAAACACA TCTGAACCTA GTTTTTAAGT
  GACTCTCACA TTTATCACAA AGCACACGGG CAGTTTCACT GTTGTTTATA AAACGGTATA
  Y
  GCCCAGTCAT GTATAGACCT CTATCAGAAT GCACAGGATC TCCTATTAGT ATACATTCTT
  TCCTTAAAAC TCACATAAAT AGTCCCAAAC AGTGACATGC ACTGTTTGAC ACAGATTACG
  CTTATGGTAC AGAAGACACC CCCAAGCTGC TGAGGTCACA GACTTACCCT ATAATATACT
  CAGTCACAAC ATATGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8760162	WI_WGS_X_44217519	WI	MOUSE	f	SNP							T		C
ss38382460	NES09719288	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6354097					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38382460	NES09719288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60165277 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Rr691612	regulatory region 691612	1808 bp distal
Tssr5626	transcription start site region 5626	1871 bp upstream
Tssr161069	transcription start site region 161069	1361 bp downstream
Tssr161070	transcription start site region 161070	1172 bp downstream
Tssr161071	transcription start site region 161071	1148 bp downstream
Tssr161072	transcription start site region 161072	828 bp downstream