rs6354271 SNP Detail

Summary

• ID
  rs6354271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125670949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAAGAGTTTT
  CTGTGTATGG CAAAGGCATG CTAGTACCCA CCGTAAAGAG TATGTCTATA GCACCCAGCA
  TAGTGACTAT TGAAGCAGAG CTGTAACTAA AGTCTTGTGC ATACAGATTA ATGTTTCCTC
  AATGTAATCC CCTTAAAATA GAAAGCTCAA ggctggagag gtggctttga gaataagagc
  atttttcttg cagatgacat ggggattcta acatcctctt ctgacctttg ataccagaca
  Y
  tcatgtgaaa ctcagaatat gtgagcaaaa cactcgtgta cacataataa tcataaaTTA
  ACACATACAA ATAAAATAGA ATGTCCATGT TACACAGTAC ATGATGTTAT CCTTATCCAA
  GGAACAGTTT CATGAAGCNT AATGCTTGTG TGAACCAGTA TACATACATC AATCGTTTTA
  TCACTTTAGG TAAAATAAGT GTTATTTAAC ACTAACTGTA ATTCCAGAAC AGTTGAACTG
  ACAGGAAAGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8760337	WI_WGS_1_126530474	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354271					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125670949 () rs orientation: forward

Symbol	Name	Function Class
Gpr39	G protein-coupled receptor 39	within coordinates
Rr371980	regulatory region 371980	958 bp upstream