rs6354392 SNP Detail

Summary

• ID
  rs6354392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72852052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGAGGCGGCG
  ACATGAAAGC AGTAGGTCCC CCAGCTTTGC AGACCGAGTT CGAGGCTCCC TGGCTCTAGC
  TTCAGTATGT GGACAGGAGG GTAGCATACT CGGTCCCCCG CCACCCTCGG CGGGGCGGGG
  CGGCGGCTGC TATTGCGGCC GGAAGGGGTG TGGGTGCAGG GCGGGTCCCG CGCCGCCCCG
  CCCAGAGGAC GGAGCCCCGG GCACAGCATC CTGGCGCGGG CCCGGGCTGC CATAGCCACT
  R
  CCGTCGGGGA AGGTCCCAGC GTGGTCATGG CCTCCCGAGG GGCCCGCCCC GCCCCAAGCT
  CGCAGCACTC CACACAGTAG CCTTGAGGAG AAGCGACCTG GACGTCGCGG ACGGCCGGGC
  AGGCAGCATG GAGGAGGCGC ACCTGCTCTC CGCTGCCGAC GTGCTGCGTC GCTTCTCGGT
  GACAGCCGAG GGCGGCTTGA GCCTGGAGCA GGTGACCGAC GCGCGGGAGC GTTACGGCCC
  CAACGGTGAG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8760460	WI_WGS_11_73562109	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354392					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72852052 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	within coordinates
Rr450779	regulatory region 450779	772 bp distal
Rr450780	regulatory region 450780	47 bp distal
Rr450781	regulatory region 450781	within coordinates
Rr450782	regulatory region 450782	1429 bp proximal
Tssr102861	transcription start site region 102861	931 bp downstream
Tssr102862	transcription start site region 102862	47 bp downstream
Tssr102863	transcription start site region 102863	within coordinates