rs6354459 SNP Detail

Summary

• ID
  rs6354459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4537692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACCAAA GAAATGCTTC
  CTTCAGACTA AACTGACAAG AATTTGATAG CACACAGGAG TAGATCCACG TCAGTAGCTC
  TCTGAAAAGT TTGTTAACTG TATATGATGG GCTTCTTCAA ACCACTGCTT TGAGACTGTG
  ATCAAGTAGT CTGTTTACAT AAGGTTGTTT CTTTCTCTCG TATTAGAGCA CGTACTGATA
  Y
  AAAGCACACT TGAAACTTTC CTGTCCTGGC TGCCTCTCCC ACTCTGAGCC AGTTTAAAAT
  GGTCTCTCTG ACTCTTACTT CACAGGGTCC CCCTGGTCCC CCTGGACCTC CTGGTCCTCC
  TGGTGTCAGC GGAGGTGGCT ATGACTTTGG TTTTGAAGGA GACTTCTACA GGGCTGACCA
  GCCTCGCTCC CAGCCTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8760529	WI_WGS_6_4241705	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354459					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4537692 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	279 bp upstream
Tssr1770	transcription start site region 1770	963 bp upstream
Tssr54726	transcription start site region 54726	81 bp upstream
Tssr54727	transcription start site region 54727	153 bp upstream
Tssr54728	transcription start site region 54728	252 bp upstream
Tssr54729	transcription start site region 54729	298 bp upstream
Tssr54730	transcription start site region 54730	924 bp upstream
Tssr54731	transcription start site region 54731	979 bp upstream
Tssr54732	transcription start site region 54732	999 bp upstream
Tssr54733	transcription start site region 54733	1775 bp upstream
Tssr54734	transcription start site region 54734	1786 bp upstream
Tssr54735	transcription start site region 54735	1800 bp upstream
Tssr54736	transcription start site region 54736	1824 bp upstream
Tssr54737	transcription start site region 54737	1846 bp upstream
Tssr54738	transcription start site region 54738	1884 bp upstream
Tssr54739	transcription start site region 54739	1899 bp upstream
Tssr54740	transcription start site region 54740	1963 bp upstream