rs6354573 SNP Detail

Summary

• ID
  rs6354573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98399272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATAATG TGGCACGATG
  GGCACAAAAG AAGCAGAGCG GAGGTGCAGA GAGGGACGAA TACCCAGCCA TCCTCAAATC
  ACTAAAACAG AATTCTGTCC TTGGCCTTGG AGAAGAGATT GCTCCAGGGA CTGACAGAGG
  TGGCTAGGAG AGCGACTACA GAGGAGCAAA GCCTGGGTCA AAATTAAATC GCGGAGGCAG
  R
  TAAGTTCAGT GATCTCCGGG GGAAGCCCCA GAACAGACGT CCAGGATGTC AGAGATCACA
  GTGAGGACTG AGCAGAGCCT GGGCCGCCAC CGGGAGCCGC CATCGCCTAC CTCCGCGGGG
  CCCCGAGGGT CCACCGAGGC ACCGATCCCC AGGACGACTC CCCAGACTTC GCCAGCTCCC
  TACAGCATAC CGCTCTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8760643	WI_WGS_13_95612474	WI	MOUSE	f	SNP								A		G
ss49134058	NES12474235	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G		A	A	A	A		A	A	G	A
ss145048344	ENSMUSSNP4142101	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A												G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6354573					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49134058	NES12474235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98399272 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	312 bp upstream
Cpgi5999	CpG island 5999	within coordinates
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	341 bp upstream
Tssr120795	transcription start site region 120795	423 bp upstream
Tssr120796	transcription start site region 120796	498 bp upstream
Tssr120797	transcription start site region 120797	562 bp upstream
Tssr123622	transcription start site region 123622	182 bp downstream
Tssr123623	transcription start site region 123623	262 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates