rs6354587 SNP Detail

Summary

• ID
  rs6354587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91732958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCCGAATCCC TGTCCTTTCT TGAACACTCA GTATGGCTGC CCGAAGCCAG
  K
  CCACAGGAGC TGCTGGGGCT TCAGAGTGGG GGTCACACTC AGGAAGTGTC           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8760657	WI_WGS_6_92535770	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6354587					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91732958 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	437 bp upstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	1140 bp upstream
Tssr57746	transcription start site region 57746	997 bp downstream
Tssr57747	transcription start site region 57747	803 bp downstream
Tssr57748	transcription start site region 57748	20 bp upstream
Tssr57749	transcription start site region 57749	166 bp upstream
Tssr57750	transcription start site region 57750	516 bp upstream
Tssr57751	transcription start site region 57751	617 bp upstream
Tssr57752	transcription start site region 57752	1006 bp upstream
Tssr57753	transcription start site region 57753	1842 bp upstream
Tssr57754	transcription start site region 57754	1941 bp upstream
Tssr62094	transcription start site region 62094	740 bp upstream