rs6355282 SNP Detail

Summary

• ID
  rs6355282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125671088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCCTTAAAAT
  AGAAAGCTCA Aggctggaga ggtggctttg agaataagag catttttctt gcagatgaca
  tggggattct aacatcctct tctgaccttt gataccagac antcatgtga aactcagaat
  atgtgagcaa aacactcgtg tacacataat aatcataaaT TAACACATAC AAATAAAATA
  GAATGTCCAT GTTACACAGT ACATGATGTT ATCCTTATCC AAGGAACAGT TTCATGAAGC
  Y
  TAATGCTTGT GTGAACCAGT ATACATACAT CAATCGTTTT ATCACTTTAG GTAAAATAAG
  TGTTATTTAA CACTAACTGT AATTCCAGAA CAGTTGAACT GACAGGAAAG GTGACTACGG
  GTGTGAAGGC ATCATGTTCA GTGTAGAGAC TCTGGACCAT TCCTTAGTGG GGATGCAGTG
  GGCAGCACAA GATTCTAGAG TTCTATTTCC AGTGCTGTGG GATTTAAAGA TTATGAATGG
  TTTTCAGAAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8761355	WI_WGS_1_126530613	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6355282					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125671088 () rs orientation: forward

Symbol	Name	Function Class
Gpr39	G protein-coupled receptor 39	within coordinates
Rr371980	regulatory region 371980	819 bp upstream