rs6355458 SNP Detail

Summary

• ID
  rs6355458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56434440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCTAGC CATGGACAAG
  CTACATTAGT TATACTCAGG CTATAAAAAG GGATTTAATC GAATATGCTA TGGAGCTAAG
  ACAGGAAGCT TCCCAGTCAC ATAATTTCAG TGTCTACTAA TTATAAATGA GATTAATCGG
  AATCCATCAA TCAGTCTGAA GCATAAGCAT TTAAACAAAA CATACTACTG TGCATTTATG
  R
  TGGGAGCATG TGCGTGTGGT AGCGCTAATG TGGGTCAGAG GACAACTCTG TAGTCAATAT
  GCTATTTCCA CTTTTGTGTG TGAATAGCAC AGGCTACAAA AAACAGTGAT TTTTAATCAA
  ATCAGTGGGT AAAAATGCTT TGCCCACTGA GCTCTCTCAG TGGCCAAGCA TATTAAAAAA
  TAAAAATAAA AGGTTGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8761533	WI_WGS_X_40460716	WI	MOUSE	f	SNP							G		A
ss38387882	NES09719169	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6355458					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38387882	NES09719169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56434440 () rs orientation: forward

Symbol	Name	Function Class
Rbmx	RNA binding motif protein, X chromosome	within coordinates
Rr8653	regulatory region 8653	1760 bp proximal
Rr395083	regulatory region 395083	981 bp downstream