rs6355510 SNP Detail

Summary

• ID
  rs6355510
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:146237076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCATTGAG AACTGCAATA AGTAATTCAA
  TTCAGTTAAT ATGTTCTATG TTCAACCCTA TGAAACTACA GCACAATGTT TTGAAAATAT
  GCAGTGATAT CAAGGCAAAT TGTGAAACAG CAGGTAAATA ATGAGCTTCC TAGAAAGTTT
  W
  ATAAGGATGT TCAtttcttt tttttttttt tttttaggta ttttcctcgt ttacattttc
  aatgctatcc caaaggtccc ccatacccac ccaccccaat cccctaccca cccactcccc
  ctttttggcc ctggcgttcc cctgtactgg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8761587	WI_WGS_1_147233292	WI	MOUSE	f	SNP							T		A
ss49693980	NES12971369	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	T		A		A	T	A		A	T	A	A		T
ss320018072	CHEV_1_148208468	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6355510					SNP	A	T	A	T	A	T	T	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49693980	NES12971369	PERLEGEN	MM_PANEL	f	SNP	A/T
ss145656527	ENSMUSSNP6089684	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146237076 () rs orientation: forward

Symbol	Name	Function Class
Rr420039	regulatory region 420039	1419 bp distal